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A Polymorphism of Insulin-Like Growth Factor Binding Protein 2 Gene Associated with Growth and Body Composition Traits in Kampong Chickens Ahmad Furqon; Asep Gunawan; Niken Ulupi; Tuti Suryati; Cece Sumantri
Jurnal Veteriner Vol 19 No 2 (2018)
Publisher : Faculty of Veterinary Medicine, Udayana University and Published in collaboration with the Indonesia Veterinarian Association

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (117.514 KB) | DOI: 10.19087/jveteriner.2018.19.2.183

Abstract

Insuline-like growth factor binding protein 2 (IGFBP2) is one of the principal binding proteins that has biological functions involved in growth, development, and differentiation. Selection for rapid growth based on molecular Marker Assisted Selection is required to increase production performance. The present study was designed to analyze the associations of IGFBP2 gene polymorphisms with chicken growth and body composition traits. Kampong chicken, a native chicken in Indonesia, is slow-growing chicken. A total of 59 males were used in the current study. Growth and body composition were measured in 24 wk of age. Primers for intron 2 region were designed from genomic chicken sequence. A c.1032C>T SNP of the IGFBP2 gene intron 2 region was detected and PCR-RFLP method was then used to genotype Kampong chicken population. The result showed that IGFBP2 polymorphism was significantly associated with body, carcass, breast, breast muscle, pectoralis minor, leg, and wings weight in Kampong chicken population (P < 0.05). The research suggests that the IGFBP2 gene could be a candidate gene that affects growth and body composition traits in chicken.
Pelatihan dan Pendampingan Konseling Sebaya Tentang Kesehatan Reproduksi Remaja di Daerah Bencana Ariani Fatmawati; Ita Djuwitaningsih; Deswani Deswani; Asep Gunawan
Intervensi Komunitas Vol 1 No 2 (2020)
Publisher : ITB Ahmad Dahlan Jakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.32546/ik.v1i2.647

Abstract

Bencana alam merupakan ancaman penting bagi kesehatan, keselamatan, keamanan, atau kesejahteraan suatu komunitas. Kegiatan pengabdian masyarakat ini dilaksanakan dengan tujuan: (1) memberikan pelatihan konseling sebaya tentang kesehatan reproduksi; (2) pendampingan konseling sebaya tentang kesehatan reproduksi; dan (3) melakukan penyuluhan dan konseling pada remaja penyintas tentang kesehatan reproduksi. Metode pelaksanaan kegiatan dilakukan dengan pelatihan dan pendampingan konseling sebaya tentang kesehatan reproduksi remaja. Hasil dari kegiatan ini adalah: (1) peserta antusias mengikuti kegiatan pelatihan; (2) hasil post-test dari kuesioner tentang kesehatan reproduksi perempuan dari lima materi yang disampaikan yaitu tentang menstruasi, IMS, HIV/AIDS, kekerasan seksual, kehamilan yang tidak diinginkan, kesehatan jiwa dan dukungan sosial, pengetahuan peserta meningkat dengan presentasi baik lebih dari 60%; (3) pendampingan konseling berhasil dilakukan oleh tiga orang fasilitator yang dibagi menjadi tiga daerah yaitu Kota Palu, Kab. Sigi dan Kab. Donggala; (4) setelah seminggu didampingi untuk melakukan konseling, para peserta dapat melakukan penyuluhan dan konseling tentang kesehatan reproduksi remaja mampu melakukan secara mandiri. Rencana tindak lanjut dari kegiatan ini adalah berkoordinasi memfasilitasi tenda ramah remaja, toilet laki-laki dan perempuan dipisah, melakukan koordinasi dengan petugas keamanan untuk mencegah terjadinya kekerasan seksual, melibatkan lembaga-lembaga yang bergerak dalam perlindungan perempuan dan anak guna pencegahan dan penanganan kekerasan seksual.
Identification of Single Nucleotide Polymorphism and Pathway Analysis of Apolipoprotein A5 (APOA5) Related to Fatty Acid Traits in Indonesian Sheep A. Gunawan; D. Anggrela; K. Listyarini; M. A. Abuzahra; Jakaria Jakaria; M. Yamin; I. Inounu; C. Sumantri
Tropical Animal Science Journal Vol. 41 No. 3 (2018): Tropical Animal Science Journal
Publisher : Faculty of Animal Science, Bogor Agricultural University

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (581.335 KB) | DOI: 10.5398/tasj.2018.41.3.165

Abstract

This study was aimed to identify single nucleotide polymorphism (SNP) and pathway analysis of APOA5 with fatty acids traits in sheep. A total of 47 rams consisted of 20 heads of Javanese Fat Tailed (JFT), 17 heads of Javanese Thin Tailed (JTT), and 10 heads of Garut Composite Sheep (GCS) were used in this study. Fatty acids traits were measured at the age of 12 months with the average body weight of 25-30 kg. Identification of polymorphism of APOA5 (g.26929941 C>T) gene were analyzed using Polymerase Chain Reaction-Restriction Fragment Length Polymorphism (PCR-RFLP). The pathway analysis of APOA5 gene was performed using Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. The SNP of APOA5 gene were found polymorphic with three genotypes (CC, CT, and TT). The gene frequency of CC, CT, and TT were 0.83, 0.11, and 0.06, respectively. The chi square test revealed that the locus of APOA5 (g.26929941 C>T) was in Hardy-Weinberg equilibrium, except in thin tailed sheep. The chi-square values of JFT, JTT, and GCS were 0.05, 0.03, and 0.04, respectively. A SNP of APOA5 was associated (P<0.05) with polyunsaturated fatty acids including eicosapentanoic acid (C20:5n3) and docosahexanoic (C22:6n3) and saturated fatty acid lauric acid (C12:0) in combined population (JFT, JTT, and GCS). Furthermore, pathway analysis showed that APOA5 belonged to phagosome and peroxisome proliferator-activated receptors (PPAR) signaling pathway. In conclusion, this analysis has identified APOA5 and related pathway crucial for fatty acid composition and metabolism in sheep, as well as this gene provide molecular marker to select sheepmeat with high unsaturated fatty acid.
Polymorphisms and Associations of the NRAMP-1 and iNOS Genes on Newcastle Disease and Salmonella enteritidis Resistances in SenSi-1 Agrinak Chickens M. Ardiyana; A. Gunawan; S. Murtini; T. Sartika; C. Sumantri
Tropical Animal Science Journal Vol. 43 No. 2 (2020): Tropical Animal Science Journal
Publisher : Faculty of Animal Science, Bogor Agricultural University

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (480.018 KB) | DOI: 10.5398/tasj.2020.43.2.95

Abstract

NRAMP-1 and iNOS genes were reported to be associated with a defense mechanism against bacteria and virus infections. This study aimed to identify NRAMP-1 and iNOS genes polymorphisms and their associations with the defense mechanisms against Salmonella enteritidis and Newcastle Disease (ND) in SenSi-1 Agrinak chicken. The present study used a total number of 172 SenSi-1 Agrinak chicken. Identifications of NRAMP-1 and iNOS genes polymorphisms were performed by PCR-RFLP method. NRAMP-1 and iNOS genotypes were associated with immunoglobulin Y (IgY) concentration, specific antibodies against S. enteritidis and ND using General Linear Model (GLM). Immunity characteristics were further grouped into high, medium, and low categories. NRAMP-1|SacI exon 11 and iNOS|AluI intron 24 in SenSi-1 Agrinak chickens were polymorphic. TC genotype has a higher immune response to infectious agents compared to TT and CC genotypes. The frequency of C allele was higher than the T allele in the concentration of immunoglobulin Y (IgY), antibodies titers against S enteritidis and ND. The TC genotype of NRAMP-1 gene was significantly associated with ND antibody titers, and the TT genotype of iNOS was significantly associated with S. enteritidis specific antibody. NRAMP-1 and iNOS genes can be used as potential candidate genes for immune traits in SenSi-1 Agrinak chickens.
Genetic Variation of Eight Indonesian Swamp-Buffalo Populations Based on Cytochrome b Gene Marker M. Rusdin; D. D. Solihin; A. Gunawan; C. Talib; C. Sumantri
Tropical Animal Science Journal Vol. 43 No. 1 (2020): Tropical Animal Science Journal
Publisher : Faculty of Animal Science, Bogor Agricultural University

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (710.189 KB) | DOI: 10.5398/tasj.2020.43.1.1

Abstract

Genetic variation is a major concern in animal genetic resources conservation program. This study aimed to analyze genetic variation and phylogeography of eight Indonesian swamp-buffalo populations based on cytochrome b gene marker. A total of 78 DNA fragment samples originating from eight Indonesian swamp-buffalo populations were used in this study, namely Bombana Island, Bombana mainland, Kolaka, Konawe, North Toraja, West Nusa Tenggara, Banten, and Aceh with 11, 10, 13, 14, 10, 10, 5, and 5 samples, respectively. The cytochrome b gene sequence and genetic variation parameters were analyzed in MEGA software (ver 6), and DnaSP software (ver 5.10.01). The results of this study showed that all DNA-fragment samples were successfully amplified by PCR technique with the size target (906 bp). Based on the distribution of all samples, it was found 9 polymorphic sites, and 10 haplotypes with the haplotype diversities were 0.6590. The average of genetic distances between populations ranged from 0.0000-0.002. They were grouped into two main clusters. The first cluster consisted of Aceh, North Toraja, West Nusa Tenggara, Banten, Kolaka, and Konawe populations, meanwhile, the second cluster consisted of Bombana Island, Bombana mainland, Kolaka, and Konawe populations. The results of the study were concluded that eight Indonesian local swamp-buffalo populations were grouped into two main clusters where Bombana Island and Bombana mainland populations were specific breeds because they were only found in the second cluster and also had specific nucleotides sites on the 57 nucleotides which C base changed to T. The results of this study were useful in formulating the program of conservation and utilization of Indonesian buffalo genetic resources, especially in the buffalo population with specific breeds.
Polymorphism of L-FABP (SNP g. 1593 C>T) Gene and Its Association with Fatty Acid Composition, Carcass, and Meat Quality in Cihateup Duck A. S. Mentari; A. Gunawan; R. R. Noor
Tropical Animal Science Journal Vol. 43 No. 2 (2020): Tropical Animal Science Journal
Publisher : Faculty of Animal Science, Bogor Agricultural University

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (536.03 KB) | DOI: 10.5398/tasj.2020.43.2.103

Abstract

Fatty acid composition, carcass, and meat quality are quantitative traits which are controlled by several genes or polygenic. One of the genes that plays important role in the fatty acid in meat quality and fatty acid composition is liver-type fatty acid-binding protein (L-FABP). The aims of this study were to identify single nucleotide polymorphism (SNP) of liver-fatty acid binding protein (L-FABP) gene and its association with fatty acid, carcass, and meat quality traits in cihateup duck. Cihateup ducks were originated from Tasikmalaya, West Java, Indonesia. The study used a total of 98 ducks aged of 12 weeks old with the average body size of 1.4±0.12 kg for PCR-RFLP analyses and 76 ducks for the association analyses. Polymerase Chain Reaction-Restriction Fragment Length Polymorphism (PCR-RFLP) was used to identify SNP g. 1593 (C>T) of L-FABP gene. The associations of L-FABP genotypes with fatty acid, carcass, and meat quality traits were performed using T-test procedures. The result showed that the SNP of L-FABP gene was polymorphic with three genotypes (CC, CT, and TT). The Chi-square test revealed that the locus of L-FABP (g. 1593 C>T) was in Hardy - Weinberg equilibrium. L-FABP gene was significantly associated (p<0.01) with the carcass portions, providing neck and percentage of neck as well as significantly associated (p<0.05) with saturated fatty acids, i.e., lauric acid (C 12:0) and palmitic acid (C 16:0); polyunsaturated fatty acid, i.e., eicosadienoic acid (C 20:2); carcass portions, i.e. neck and percentage of neck. The SNP g. 1593 (C>T) of L-FABP gene may be a useful marker for selecting and producing duck meat having desirable fatty acids and carcass and meat quality.
Polymorphism of CD1B Gene and Its Association with Yolk Immunoglobulin (IgY) Concentration and Newcastle Disease Antibody Titer in IPB-D1 Chicken M. F. Al-Habib; S. Murtini; A. Gunawan; N. Ulupi; C. Sumantri
Tropical Animal Science Journal Vol. 43 No. 3 (2020): Tropical Animal Science Journal
Publisher : Faculty of Animal Science, Bogor Agricultural University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.5398/tasj.2020.43.3.197

Abstract

The CD1B gene has an important role in the immune system of poultry by mediating antibody induction. The study aimed to identify the CD1B gene polymorphism and its association with the concentration of IgY and ND antibody titers in IPB-D1 chicken. As many as 111 of IPB-D1 chickens at 21 weeks old were used in this study. Polymorphism identification of the CD1B gene was made using the PCR Sequencing method, while the IgY and ND antibody titers were done using the ELISA and HI test, respectively. The associations of gene polymorphism with IgY and ND antibody titers were analyzed using the General Linear Model (GLM) procedure and Duncan`s Multiple Range test. The results show that there are 4 SNPs in exon 3, i.e., c.550 G>A, c.562 T>A, c.588 A>G, and c.612 C>G. All the SNPs are missense, silent mutations, and polymorphic. The c.550 G>A and c.562 T>A SNPs were in Hardy Weinberg’s equilibrium and heterozygosity (0.054-0.252) condition, while the c.588 A>G and c.612 C>G SNPs were not in equilibrium and their heterozygosity was low (0.072-0.252). The combination of 4 SNPs generated 8 haplotypes, i.e., haplotypes 1, 2, 3, 4, 5, 6, 7, and 8. Haplotypes 1, 2, and 8 had high frequencies (17.6%-23.5%). The c.588 A>G and c.612 C>G mutations were significantly associated (p<0.05) with IgY concentration and c.562 T>A were significantly associated (p<0.05) with ND antibody titers. The haplotypes 2 and 8 with a combination of c.588 A>G and c.612 C>G mutations had higher IgY concentration and ND antibody titers (p<0.05) compared to the other haplotypes. In conclusion, this study has identified the CD1B gene as a polymorphic and is associated with IgY concentration and ND antibody titers in IPB-D1 chicken.
Preliminary study of solute carrier family 23 member 3 (SLC23A3) gene as candidate marker for fatty acid traits in Kampung-Broiler crossbred chickens A. Gunawan; S. Y. Basril; K. Listyarini; A. Furqon; W. Bilyaro; J. Jakaria; M. J. Uddin; C. Sumantri
Journal of the Indonesian Tropical Animal Agriculture Vol 43, No 3 (2018): September
Publisher : Diponegoro University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14710/jitaa.43.3.201-210

Abstract

SLC23A3 is one of the key genes which control the properties of the of fatty acids content in the meat. The aim of this study was to identify the association of SNP and mRNA expression of SLC23A3 as a candidate marker for fatty acid traits (FAs). Sixty two F2 Kampung × Broilers crossbred chickens population were used in this study. FA composition was measured at 12 weeks of age from thigh meat of crossbred chicken. The PCR-RFLP and qRT-PCR were used for association study and expression analysis of SLC23A3 gene with divergent fatty acid composition. A SNP in coding region c.22385690 A>C of the SLC23A3 gene was associated (P<0.05) with fatty acid composition including stearic acid (C18:0), elaidic acid (C18:1n9t), and linoleic acid (C18:2n6c). The SLC23A3 was detected in liver from high fatty acids (HFA) and low fatty acid (LFA) composition. However, gene expression of SLC23A3 were not differentially expressed between HFA and LFA. These results will explain better understanding of the key important role of the SLC23A3 in fatty acid traits within the liver and will propose SLC23A3 as a potential genomic selection for selection of chickens with fatty acid composition.
Exploring effects of betaine-homocysteine methyltransferase (BHMT) gene polymorphisms on fatty acid traits and cholesterol in sheep J. P. Munyaneza; A. Gunawan; R. R. Noor
Journal of the Indonesian Tropical Animal Agriculture Vol 44, No 3 (2019): September
Publisher : Diponegoro University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14710/jitaa.44.3.243-251

Abstract

This study was aimed to explore the effects of Betaine-Homocysteine Methyltransferase (BHMT) gene polymorphisms on fatty acid traits and cholesterol in lambs. This study used a total of 147 blood samples for genotyping including 19 Javanese Fat-Tailed (JFT), 16 Javanese Thin-Tailed (JTT), 41 Composite Garut (CG), 35 Compass Agrinak (CA) and 36 Barbados Black Belly Cross (BC). A total of 61 rams as representative from five breed of sheep were selected for association study. Identification of BHMT single nucleotide polymorphisms was analyzed by PCR-RFLP method. Association of BHMT genotypes with fatty acid traits and cholesterol was performed by T-TEST. BHMT genotyping resulted into three genotypes (CC, CT and TT). Gene frequency of BHMT (g. 9947372 C>T) was in Hardy-Weinberg Equilibrium, excluding Javanese Fat-Tailed sheep. Association of BHMT genotypes with fatty acid traits resulted into a significant association (P<0.05) with C14:1, C17:1 and C18:0 fatty acids but not with cholesterol in sheep. SNP g. 9947372 (C>T) of BHMT gene might be a useful marker for selecting and producing sheep meat with desirable fatty acids. 
Polymorphisms KIF12 GENE|BfaI and its Association on Carcass Characteristics and Lamb Meat Quality Raudah Putri Ekawati; Ratna Sholatia Harahap; Kasita Listyarini; Cece Sumantri; Asep Gunawan
Buletin Peternakan Vol 46, No 4 (2022): BULETIN PETERNAKAN VOL. 46 (4) NOVEMBER 2022
Publisher : Faculty of Animal Science, Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21059/buletinpeternak.v46i4.77029

Abstract

One of gene which involves on mediation an antioxidant cascade in beta cells as an intracellular target of excess fat intake is Kinesin Family 12 (KIF12). This study aims to identify the diversity of SNP g. 9617965 C>T KIF12 and association with carcass characteristic and meat quality. The total sample used were 102 ram DNA samples consisted of 10 barbados cross sheep (BCS), 52 javanese thin tail (JTT), 15 jonggol sheep (JS), 15 garut sheep (GS), and 10 compass agrinak sheep (CAS). Identification of the diversity of KIF12|BfaI was conducted using the Polymerase Chain Reaction-Restriction Fragment Length Polymorphism (PCR-RFLP) method. The results showed that the amplification product was 696 bp. The diversity of the KIF12 gene was found three genotypes namely CC, CT, and TT. The allele frequency in all types of sheep was in Hardy-Weinberg equilibrium. A SNP of the KIF12 was associated (P<0.05) with characteristic of carcass, including length of carcass. The association of KIF12 with meat quality was significant (P<0.05) too associated with pH and water holding capasity (WHC). It could be concluded that KIF12 gene is a potential candidate gene for carcass characteristic and meat quality traits in sheep
Co-Authors A. Furqon A. S. Mentari Ahmad Furqon Akbanugra Yudhananda Akhmad Solihin Alfadhilah, Azzahra aliyah, siti nur Andini, Diong Anneke Anggraeni Astira, Adinda Wanda Ayu Safitri, Nita Bintari Janatunnisa, Meida C Sumantri C. Sumantri C. Sumantri C. Sumantri C. Sumantri C. Talib Cahyo Budiman Cece Sumanri Cece Sumantri Chalid Talib Chandra Anugrah Putra D. Anggrela D. D. Solihin D.A.R, Deni Dedi Duryadi Solihin Dedi Duryadi Solihin Depison Depison Depison Depison Desi Hasbiyah Deswani Deswani DEWI APRI ASTUTI Diana Sari, Deuis Dwi Mulyani, Mutia Edi Kusmayadi Elmy mariana F Hasan Falizar Rivani Fatmawati, Ariani Febriyansyah, Hevy Fidha, Rofiqotul Firmansyah, Adit Fisma Amri Gushairiyanto Gushairiyanto Hadi Harisuddin, Abdul Hanum Isfaeni Heksa putra , Dadang Heni Marliany Herpina Herpina Himmatul Khasanah I. Inounu Ikhtiono, Gunawan Ima Sukmawati, Ima Indriya Indry Yunizul Pesha Irpan Ali Rahman Ismeth Inounu Istikomah, Hana Ita Djuwitaningsih J. P. Munyaneza Jakaria Jakaria Jamil, Seli Nur Fatimah Jaya, Suhana Minah Junaedi Junaedi K. Listyarini K. Listyarini Katrin Roosita KURNIAWAN, SYAHRUL FAUZI Kusnadidi Subekti Linda Oktavianingsih Listyarini, Kasita Luse Tokan, Alvares M. A. Abuzahra M. Ardiyana M. F. Al-Habib M. F. Ulum M. J. Uddin M. Yamin Ma'arif, Naufal MARIA ULFAH Maulidina, Azzahra Mohamad Yamin Mohamad Yamin Mubarak, Zahid Muh. Rusdin Muhamad Azhar Alwahid Muhammad Andi Setiawan Muhammad Suhendra, Muhammad Mulmuttaqin, M. Imam N. Ulupi Nawawi, M. Kholil Niken Ulupi Noneng Siti Rosidah NOVIANTI, ELIS Novita Nur Anggraeni Nur Amalina, Nadilah Nur Fauziah, Diny Nur Hidayat Nur'apipah, Pipih Palan Taran, Arsyifa Pratama, Bondan Priyanto Priyanto Purnama, Dwi Rahmawati Putri , Nendela Resta Angga Putri Ria Angelina Putri, Wulan Cahya Putriani, Siti Nurmah Qhamarullah, Ariefuddin R R Noor R. Iis Arifiantini R. Priyanto R. Putri R. R. Noor R. R. Noor Rahmah, Amelia Azizah Rahmalia, Novita Rahmasuli, Resa Ranawigena, Ghaitsa Ratna Ratna Ratna Sholatia Harahap Raudah Putri Ekawati RH Mulyono, RH Risman, Helda Rivani, Falizar Robbani, Muhammad Fikri Rofiah Ronnie Permana Ronny Rachman Noor Rudi Afnan Rudi Kurniawan Rudy Priyanto S. Murtini S. Murtini S. Y. Basril Saepudin, Didin Septiyawan, Ganda Adi Shidiq, Fajrin Siti Afifah Solihah, Rosidah SRI RAHAYU Suhanda Suhanda , Suhanda Sulistiarini, Sulistiarini Sutisna Sutisna SYAMSUDAR, BANGBANG Sya’bana, Muhamad Rizki T. Sartika Tajudin, Ahmad Tiara Ningrum, Putri Azizah Tohir Solehudin Tri Rochmadi Tuti Suryati Utama, Muhammad Alif Wicaksono , Yanuar Widya Pintaka Bayu Putra Woki Bilyaro Yanuar, Irfan Yono, Yono Yudi Wahyudin Suwandi Yuliananda, Devi Yulianto Yulianto Yun Alwi Yusuf Safari Yusuf, Salman Zaenal Aripin Zakiyah Harsyah, Fathiyah