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Optimization of Somatic Embryogenesis Induction of Cassava (Manihot esculenta Crantz) Susanti, Idha; Suharsono, Suharsono; Widyastuti, Utut; Siregar, Ulfah Juniarti; Tjahjoleksono, Aris
ANNALES BOGORIENSES Vol 21, No 2 (2017): Annales Bogorienses
Publisher : Research Center for Biotechnology - Indonesian Institute of Sciences (LIPI)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/ab.v21i2.223

Abstract

The embryogenesis (SE) has important role for genetic engineering of cassava (Manihot esculenta Crantz). However, the success of SE induction depend on plant growth regulator s (PGR)s and treatment enriched in induction media.  This experiment tried to induce callus formation of cassava from several in vitro explants: immature leaf, apical bud, and internode; and to develop somatic embryogenesis of cassava in several media enriched with tyrosine and copper sulphate (CuSO4) added into media enrich with picloram as treatment.  Different response of explants source to callus induction treatment from those three varieties in callus induction as well as friable callus formation were found in this experiment. The best medium to induce varied with variety; MS media supplemented 12 mg/L picloram + 0.5 mg/L CuSO4 was the best for “Adira 4” and  half MS and half GD media supplemented 12 mg/L picloram + 100 mg/L tyrosine for “Malang 6”.  All treatments resulted somatic embryo which developed indirectly and in morphologically normal somatic embryos
Constitutive Expression of Candida antarctica Lipase B (CALB) in Pichia pastoris Using pGAPZα Vector Wahyuni, Febriana Dwi; Fuad, Asrul Muhamad; Suharsono, Suharsono
ANNALES BOGORIENSES Vol 20, No 1 (2016): Annales Bogorienses
Publisher : Research Center for Biotechnology - Indonesian Institute of Sciences (LIPI)

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (461.586 KB) | DOI: 10.14203/ab.v20i1.225

Abstract

The CalBsyn gene was previously constructed synthetically to encode Candida antarctica lipase B (CALB). Lipase from CalBsyn gene is slightly different from that of wild type CALB (CALB-wt) where it has three amino acids substitutions at different positions, i.e. V210I, A281E, and V221D, to improve enzyme’s thermostability and catalytic efficiency. The CalBsyn gene was isolated from pJ912-CalBsyn vector by digestion using XhoI restriction enzyme. The CalBsyn gene then was ligated to pGAPZα expression vector and transformed into E. coli TOP10F’ in order to obtain recombinant vector pGAPZα-CalBsyn. The result showed that pGAPZα-CalBsyn recombinant vector was successfully transformed into E. coli TOP10F’ with transformation efficiency of 4.11 x 103 cfu/µg plasmid DNA. The pGAPZα-CalBsyn recombinant plasmid was successfully introduced into Pichia pastoris SMD1168H using electroporation method with transformation efficiency of 1.01 x 102 cfu/µg DNA. Qualitative lipase activity assays showed that transformed P. pastoris secreted recombinant lipase (CALB) and has lipolytic activity; while quantitative lipase activity assays showed that the lipase activity was 63.5 Units/ml in 48 hours. Analysis using SDS-PAGE showed that CALB protein was expressed successfully and the recombinant protein’s molecular size was approximately 45 kDa.
Partial Purification, Characterization, and Application of Extracellular Aspartic Protease from Lactobacillus casei WSP in Producing the Bioactive Peptides with Antibacterial and Antioxidant Activity Solikhin, Akhmad; Mustopa, Apon Zaenal; Suharsono, Suharsono; Putranto, Wendry Setiyadi
ANNALES BOGORIENSES Vol 22, No 2 (2018): Annales Bogorienses
Publisher : Research Center for Biotechnology - Indonesian Institute of Sciences (LIPI)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/ann.bogor.2018.v22.n2.47-56

Abstract

   Lactobacillus casei WSP-derived an aspartic protease was sequentially purified by using chromatography gel filtration sephadex G-50. It resulted in a 22.81-fold increase of specific activity (51.5 U/mg) with a final yield of 1.9%. The estimated molecular weight of the purified enzyme was 37 kDa and showed gelatinolytic activity in zymogram assay. The enzyme exhibited optimum activity at 40ºC and pH 6 with casein as the substrate. Enzyme activity was significantly inhibited by pepstatin A (0.5 mM and 1 mM), confirming that this enzyme is a group of aspartic proteases, while other inhibitors such as EDTA, PMSF and iodoacetic acid showed no inhibition effect on the activity of enzyme. The addition of metal ion to the enzyme decreased enzyme activity, indicating the proteolytic enzyme was metal ion- dependent. Denaturant such as DDT tended to increase caseinolytic activity. Furthermore, this enzyme was capable of generating the new peptides from skimmed milk with the size 8 kDa, 10 kDa and 15 kDa. These peptides have potential as antibacterial and antioxidant agents.
KERENTANAN EROSI DI DAERAH MANADO DAN SEKITARNYA, SULAWESI UTARA Hidayat, S.; Suharsono, Suharsono
Jurnal Geologi dan Sumberdaya Mineral Vol 17, No 6 (2007): Jurnal Sumber Daya Geologi
Publisher : Pusat Survei Geologi

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (7989.825 KB)

Abstract

Evolution cycle of landform in Manado and surrounding area is  caused by  weathering, erosion, transportation, sedimentation, and human factors. These processes have occurred since the land existence, and theywere strongly accelerated   by human  activities.Based on slope level, soil/rock type, vegetation/land covers, and erosion type, the erosion susceptibility in the studied area can be grouped into: high, medium, low,  and no erosion.Very high erosion occurs  on landform  of volcanic cone a and  b, volcanic slope a and b, mountain  dissected volcanic slope and dissected straight  volcanic mountain. High erosion occurs on landform  of solfatara field, fumarola, volcanic foot slope b, volcanic mountain slope elongated  dissected, volcanic slope c, residual  hill and lava flow. Medium erosion occurs on landform of volcanic  foot slope a and alluvium  fan.  Lowerosion occurs on landform of volcanic  foot slope c, intermountain plane and flood plain. No erosion occurs on landform of alluvial.Keyword: erosion succeptibility, Manado, weathering, transportation, sedimentation
The production of SPusp45-MSP-119 gene construct and its recombinant protein in Lactococcus lactis to be used as a malaria vaccine Kusuma, Amino V.A.; Mustopa, Apon Z.; Mustafawi, Wike Z.; Suharsono, Suharsono
Medical Journal of Indonesia Vol 26, No 4 (2017): December
Publisher : Faculty of Medicine Universitas Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (574.4 KB) | DOI: 10.13181/mji.v26i4.2162

Abstract

Background: Merozoite surface protein 1 (MSP-1) is a major protein used by the Plasmodium during red blood cells invasion in malaria. MSP-119, one of MSP-1 is highly conserved, and  it is a potential malaria vaccine candidate because the monoclonal antibodies are capable blocking erythrocyte invasion in vitro. The aim of this study was to produce MSP-119 gene construct and the recombinant protein in Lactococcus lactis.Methods: Usp45-MSP-119, derived from codon optimization and the synthetic gene, was inserted into the pMAT cloning vector. A vector expressing MSP-119 included usp45 has been constructed by the manipulation of recombinant DNA using restriction enzymes. The MSP-119 protein was expressed to 45% ammonium sulfate precipitation and purified using Sephadex-G50 gel filtration chromatography. The expressed protein was characterized by SDS-PAGE and dot blot.Results: usp45-MSP-119 gene was amplified using specific primers and inserted into the multiple cloning sites in the expression vector pNZ8148 with size 3,538 bp as a recombinant vector. The protein of  MSP-119 was successfully expressed in L. lactis with molecular weight of 10.45 kDa. The dot blot was tested in 3 different comparisons between the host cells, non-induced cells, and induced cells with 10 ng/ml nisin. The results showed that 10 ng/ml nisin gave a positive reaction as detected by dot blot assay.Conclusion: This study confirmed that the usp45-MSP-119 gene was successfully inserted into the multiple cloning sites of the pNZ8148 expression vector and the MSP-119 protein expressed in the NICE system of the L. lactis host cell.
PERBEDAAN BERPIKIR KRITIS MAHASISWA PENDIDIKAN BIOLOGI YANG PROSES PEMBELAJARANNYA MENGGUNAKAN E-LEARNING DAN KONVENSIONAL Badriah, Liah; Ramdani, Dani; Suharsono, Suharsono
Bioedusiana: Jurnal Pendidikan Biologi Vol 2, No 1 (2017): Bioedusiana
Publisher : LP3MPM Universitas Siliwangi

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (256.42 KB)

Abstract

Penelitian ini bertujuan untuk mengetahui perbedaan berfikir kritis mahasiswa yang proses pembelajarannya menggunakan pembelajaran e-learning dan konvensional pada konsep ekosistem. Metode yang digunakan adalah metode komparatif dengan populasi seluruh mahasiswa biologi semester satu dengan sampel yang diambil adalah kelas 1A dan 1C yang masing-masing sebanyak 30 orang dan sampel diambil dengan teknik cluster random sampling. Pengambilan data dilakukan dengan memberikan soal essay untuk memperoleh data kemampuan berfikir kritis mahasiswa. Teknik analisis data yang digunakan adalah uji perbedaan dua rata-rata (uji-t) dengan taraf signifikan (α) = 5% menggunakan SPSS 21 for Windows. Berdasarkan analisis data dan pengujian hipotesis menunjukan nilai sig.(2 tailed) sebesar 0, 83 > 0,05 sehingga dapat disimpulkan Ho diterima artinya tidak ada perbedaan yang signifikan hasil belajar mahasiswa biologi yang proses pembelajarannya menggunakan model pembelajaran e-learning dan konvensional.Kata kunci : E-learning, konvensional, berfikir kritis
PERBEDAAN HASIL BELAJAR DAN KEMAMPUAN BERPIKIR KRITIS MAHASISWA PENDIDIKAN BIOLOGI DENGAN MENGGUNAKAN PEMBELAJARAN E-LEARNING DAN KONVENSIONAL Suharsono, Suharsono; Ramdani, Dani; Badriah, Liah
Bioedusiana: Jurnal Pendidikan Biologi Vol 2, No 1 (2017): Bioedusiana
Publisher : LP3MPM Universitas Siliwangi

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.34289/bioed.v2i1.222

Abstract

Penelitian ini bertujuan untuk mengetahui perbedaan hasil belajar dan kemampuan berpikir kritis mahasiswa biologi yang proses pembelajarannya menggunakan pendekatan e-learning dan konvensional pada konsep sistem pencernaaan makanan. Metode penelitian ini adalah metode komparatif yang menggunakan rancangan posttest control group design dengan populasi seluruh mahasiswa semester I program studi pendidikan Biologi FKIP UNSIL dengan sampel sebanyak 2 kelas yang diambil secara cluster random sampling yaitu kelas 1A sebanyak 30 orang dan kelas 1 C sebanyak 30 orang. Teknik pengumpulan data dilakukan dengan memberikan posttest untuk memperoleh data kemampuan akhir hasil belajar dan rubrik untuk mengetahui kemampuan berpikir kritis mahasiswa, teknik analisis data yang digunakan adalah uji perbedaan dua rata-rata (uji-t) dengan taraf signifikan (α) = 5%. Berdasarkan analisis data dan pengujian hipotesis menunjukan nilai sig. (2 tailed) sebesar 0,690 >0,05 untuk hasil belajar dan sig. (2 tailed) sebesar 0, 83 > 0,05 untuk berfikir kritis, dari data tersebut disimpulkan Ho diterima artinya tidak ada perbedaan yang signifikan hasil belajar dan kemampuan berfikir kritis mahasiswa biologi yang proses pembelajarannya menggunakan model pembelajaran e-learning dan konvensional.Kata kunci: e-learning, pembelajaran konvensional, hasil belajar, kemampuan berpikir kritis
PERBEDAAN JUMLAH KONSUMSI OKSIGEN (O2) PADA RESPIRASI BERBAGAI HEWAN INVERTEBRATA KELAS INSEKTA Suharsono, Suharsono
Jurnal Kesehatan Bakti Tunas Husada: Jurnal Ilmu-ilmu Keperawatan, Analis Kesehatan dan Farmasi Vol 18, No 2 (2018): Agustus 2018
Publisher : STIKes BTH Tasikmalaya

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (310.45 KB) | DOI: 10.36465/jkbth.v18i2.405

Abstract

Penelitian ini bertujuan untuk mengetahui jumlah konsumsi rata-rata oksigen yang diperlukan untuk bermetabolisme pada hewan invertenrata kelas insekta. Metode eksperimen nyata (True-experimental) dengan menggunakan rancangan acak lengkap (RAL). Perlakuan masing-masing sampel yaitu dengan menggunakan beberapa spesies hewan yang berasal dari ordo yang berbeda diantaranya jngkrik (Gryllus asimilis), belalang (Dissosteira carolina), kecoa (Blattella asahinai), kepik (Leptocorisa acuta) dan capung (Pantala flavescens). Pengumpulan data yang dilakukan dalam penelitian ini dilakukan dengan cara melakukan pengukuran volume terhadap gas oksigen yang dihasilkan pada tabung reaksi pada setiap sampel. Data yang didapat dari hasil penelitian akan dianalisis menggunakan analisis kuantitatif, teknik analisis data yang digunakan adalah uji perbedaan dua rata-rata (uji-t) dengan taraf signifikan (α) = 5%. Berdasarkan analisis data dan pengujian hipotesis menunjukan nilai  sig. (2 tailed) 0,000. < 0,05, dari data tersebut disimpulkan Ho ditolak, artinya Ada perbedaan jumlah konsumsi oksigen (O2) pada respirasi berbagai hewan invertebrata kelas insekta. Dan dilihat dari rata-rata konsumsi oksigen (O2) dapat disimpulkan jangkring menggunakan oksigen paling banyak dan konsumsi paling sedikit adalah kepik. Kata kunci : konsumsi oksigen, respirasi, insekta
Pengaruh Suhu Terhadap Siklus Hidup Lalat Buah (Drosophila melanogaster) Suharsono, Suharsono; Nuryadin, Egi
Bioeksperimen: Jurnal Penelitian Biologi Vol 5, No 2: September 2019
Publisher : Universitas Muhammadiyah Surakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.23917/bioeksperimen.v5i2.9240

Abstract

Fruit flies (Drosophila melanogaster) generally have four phases in their life cycle, namely eggs, larvae, pupae and imago. In general, Drosophila melanogaster experiences a life cycle of 8-11 days at optimal temperatures. At lower temperatures the time required to complete its life cycle is relatively longer and slower which is around 18-20 days. Whereas at higher temperatures adult flies that grow will be sterile. The development period of Drosophila melanogaster in its life cycle is influenced by several factors, namely ambient temperature, food availability, level of maintenance density and light intensity. This study aims to determine the effect of temperature on the life cycle of fruit flies (Drosophila melanogaster). The study will be analyzed using quantitative analysis using randomized block design (RBD) with six temperature difference treatments for each treatment and repeated 4 times so that there are 24 experiments. The results showed the development in the Drosophila melanogaster cycle starting from Egg - Larva (Instar I) - Larva (Instar II) - Larva (Instar III) - Pre Pupa - Pupa - Imago. The life cycle of Drosophila melanogaster has an average of 42.08 hours or 1.75 days up to 79.96 hours or 3.33 days in each treatment. And obtained a fast time during the life cycle of Drosophila melanogaster at a temperature of 30°C is 10.47 days and the longest at a temperature of 18°C is 18.35 days.
Counting the sum of cubes for Lucas and Gibonacci numbers Wamiliana, Wamiliana; Suharsono, Suharsono; Kristanto, Paustinus Edi
Science and Technology Indonesia Vol 4 No 2 (2019): April
Publisher : ARTS Publishing

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (927.852 KB) | DOI: 10.26554/sti.2019.4.2.31-35

Abstract

Lucas and Gibonacci numbers are  two  sequences of numbers derived from a welknown numbers, Fibonacci numbers. The difference between Lucas and Fibonacci numbers only lies on the first and second elements.  The first element in Lucas numbers  is 2 and the second is 1, and nth element,  n ? 3 determined by similar pattern as in the Fibonacci numbers, i.e : Ln = Ln-1  + Ln-2.  Gibonacci numbers  G0 , G1 ,G2 , ...; Gn = Gn-1 + Gn-2 are generalized of Fibonacci numbers, and those numbers are nonnegative integers. If G0 = 1 and G1 = 1, then the numbers are the wellknown Fibonacci numbers, and if G0 = 2 and G1 = 1, the numbers are Lucas numbers. Thus, the difference of those three sequences of numbers only lies on the first and second of the elements in the sequences.  For Fibonacci numbers there are quite a lot identities already explored, including the sum of cubes, but there have no discussions yet about the sum of cubes for Lucas and Gibonacci numbers. In this study the sum of  cubes of Lucas and Gibonacci numbers will be discussed and showed that the sum of cubes for Lucas numbers  is   and for Gibonacci numbers is   
Co-Authors AA Sudharmawan, AA Adi Isworo, Adi Adikara, Tatang Santanu Agung Setiabudi Aini, Kuratul Akhmad Solikhin AKIHO YOKOTA Al arif, Mohammad Anam Al Firah, Al Firah ALEX HARTANA Alimuddin, Khasan Ana Quthratun Nada Angga Sugiarto Anik Herminingsih Apon Zaenal Mustopa Arif Rianto Budi Nugroho Aris Tjahjoleksono Ashadi Ashar N, Novema Aspariansyah, Aspariansyah Asrul Muhamad Fuad, Asrul Muhamad Astanto Kasno Avellyn Shinthya Sari Aviadi, Dedi Badriah, Liah Budianingsih, Budianingsih Cahyadi, Tedy Agung Caswita Caswita Cici Indriani Dalimunthe damayanti, dini Dani Ramdani, Dani Dessy Adelin Destiana, Destiana Didy Sopandie Diki Muhamad Chaidir Diponegoro, Muhammad Djaka Marwasta Eko Teguh Paripurno Elfa Cahya Jamiati Endang Surahman Erawati, Erna Faisal Rachman Febriana Dwi Wahyuni Feri, Zefki Okta Ferry Faisal, Ferry Firdaus, Syarifin Fitri Damayanti Fitri Damayanti Fitri Wibowo Fitri, Novi Aryani Gandhi Sutjahjo Gesa Cantya Primatara Gunawan, Heru Hadiarto, Toto Hamim Hamim Harijani, Nenny Hariyadi, Rahmat Hasan Labiqul Aqil Hermana, Salma Junaina Hidanah, Sri Hutabarat, Madya I, Heriberta Reny Idayati, Tutik Rosita Idha Susanti Iif Rahmat Fauzi, Iif Rahmat Ika Barokah Suryaningsih Ika Mariska IMAM MUSTOFA Irbah, Ariq Nurjannah Ishaq, Rizal Maulana Jayawarsa, A.A. Ketut Karuwal, Ritha Lusian KINYA AKASHI Komul, Marsha Krisdiana Wijayanti Kristanto, Paustinus Edi Kusuma, Amino V.A. Kusumayudha, Sari Bahagiarti Kuswanto, Edi Lulut Handayani Maemonah, Maemonah Mahmudah, Uswatun marwoto marwoto Mochamad Widjanarko Mufti Ali Muhammad Helmi Muhammad Jusuf Muhammad Sirril Wafa Muin, Muhammad Rusli Munasik Munasik Mustafawi, Wike Z. Mustofa, Romy Faisal Mustopa, Apon Z. Mutiara, Frista Mycelia Paradise Nabiila, Alyaa Nainggolan, Adinda Rachel Nasrul, Herni Widiyah Ningrum, Hanis Rachna Noorikhsan, Faisal Fadilla Novriyandi Hanif Nugroho, Arif Rianto Budi Nugroho, Arif Riyanto Budi Nuriyatul Fitriya Nurjanah, Fitri Nuryadin, Egi Oktavianti Oktavianti Palaniappan, Ananda Kumar Pausta Yugianus Pertiwi, Nadira Rasya Polosoro, Aqwin Pramono, Sidik Prasetya, Wandy Murti Prasetyadi, C Prasetyadi, Carolus Prasetyadi, Corolus Pratama, Yudha Agung Pujiastuti, Rr Sri Endang purwoko, devit RADITE TISTAMA RATIH DEWI HASTUTI Rikoh Manogar Siringoringo Rinaldi Rizal Putra, Rinaldi Rizal Rivai, Muhamad Rizal Rochadi Abdulhadi Rohananingsih, Rohananingsih Rondhianto Rondhianto S. Hidayat, S. Sahputra, Ngatno Sahroni, Sahroni Sahupala, Sapiah Samuel Agus Triyanto, Samuel Agus Santika, Wulan Puja Saputra, Muhammad Wahyu Saputri, Niken Anggraini Sri Sari Bahagiarti Kusumayudha Sari Bahagiarti Kusumayudha Sari, Avellyn Shintya Sari, Fatihah Fajar Sarmanu, Sarmanu Sarsidi Sastrosumarjo Septiana, Erni Setiahadiwibowo, Ajimas Pascaning Shohifaha , Salsabila Sirait, Budi Chrismanto Siti Zulaeha, Siti sodiq, alwi mahardhika Soekarta, Rendra Solly Aryza Sri Hidanah Sri Langgeng Ratnasari SRI RAHAYU Sugiyarto, Angga Sulistyaningsih, Yohana C Sulistyowati, Dina Indrati Dyah Supranianondo, Koesnoto Susanto, Abiyyu Naufal Sutarto Sutarto Sutrisno, Sutrisno Suyanta Suyanta Ta'adi, Ta'adi Teuku Tajuddin Tita Damayanti Lestari Titin Handayani Trisnowati, Yuni Dwi Trustinah Trustinah Ulfah Juniarti Siregar Utut Widy Astuti UTUT WIDYASTUTI Utut Widyastuti Suharsono Vita Meylani Wahyu Hidayat Wamiliana Wamiliana Wendry Setiyadi Putranto Wening Enggarini Widya Paramita Lokapirnasari Widyastuti, Arum WIJAYANTO WIJAYANTO Winarso, Widyo Wiwik Misaco Yuniarti YanRiska Venata Sembiring, YanRiska Venata Yasir Arafat, Yasir Yeni Yulistanti Yohana Noradika Maharani Yuniati, Ratna YUSMANI PRAYOGO Zainal Muttaqin zulfitra, Zulfitra