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Journal : unej e-proceeding

Review: Phylogenetic Similarity based on amino acid sequence and Molecular characterization of 3-Phytase from Klebsiella pneumonia ASR1 ., Sajidan; Hailu, Hailu Weldekiros
UNEJ e-Proceeding Indonesian Protein Society (IPS), International Seminar and Workshop 2014
Publisher : UNEJ e-Proceeding

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Abstract

Phytase is an enzyme that catalyzes the release of phosphomonester group in phytate, thereby producing lower forms of myo-inositol phosphates and inorganic phosphate.  Phytase has an important role in animal nutrition which improves the bioavailability of nutrients.  Bacteria are one of the potential sources of phytase. For this reason, more screening of phytase producing bacteria strains from environment is needed. The other sources of phytase are fungi, plants, and some animal tissues. The PhyK protein is a phytase enzyme from Klebsiella pneumonia ASR1 and expressed in Escherichia coli, which was sequenced and characterized as a 42 kDa [1], and Crystallized [2]. The objectives are to perform phylogenetic similarity and molecular evolutionary analysis of phytase and to determine active site protein motif of phytase from different sources. The sequence from PhyK was analyzed with Basic Local Alignment Search Tools (BLAST) at http://www.ncbi.nlm.nih.gov  and ClustalW Multiple Sequence analysis program (EMBL-EBI) at http://www.ebi.ac.uk/Tools/msa/clustalw2/ to get similarity of amino acid sequence and phylogenetic trees for protein.  The result shows that PhyK protein from Klebsiella pneumonia ASR1 is 91% similar with PhyK from Raoultella terrigena (emb|AJ575300.1|), 94% similar with histidine acid phosphatase family protein from Klebsiella pneumoniae 342, and 69% similar with glucose-1-phosphatase precursor Agp from Pantoea ananatis AJ13355 (BAK10365.1).The deduced amino acid sequence of the phyK gene from Klebsiella pneumonia ASR1, although containing the functional residues of histidine acid phosphatases, displayed only 31% overall homology with appA from Escherichia coli O104:H4 str. C227-11 (EGT68141.1), 30% similar with glucose-1-phosphatase from Pantoea agglomerans (gb| ABD85282.1|) and 26% to phytase from Aspergillus fumigatus (AAU93517.1). This suggests that PhyK represents a novel subfamily histidine acid phytate-degrading enzyme and is clearly distinct from other previously characterized members of this family. Keywords: Bioinformatics, BLAST, 3-Phytase, PhyK protein, Phylogenetic Similarity
Review: Phylogenetic Similarity based on amino acid sequence and Molecular characterization of 3-Phytase from Klebsiella pneumonia ASR1 Sajidan .; Hailu Weldekiros Hailu
UNEJ e-Proceeding Indonesian Protein Society (IPS), International Seminar and Workshop 2014
Publisher : UPT Penerbitan Universitas Jember

Show Abstract | Download Original | Original Source | Check in Google Scholar

Abstract

Phytase is an enzyme that catalyzes the release of phosphomonester group in phytate, thereby producing lower forms of myo-inositol phosphates and inorganic phosphate.  Phytase has an important role in animal nutrition which improves the bioavailability of nutrients.  Bacteria are one of the potential sources of phytase. For this reason, more screening of phytase producing bacteria strains from environment is needed. The other sources of phytase are fungi, plants, and some animal tissues. The PhyK protein is a phytase enzyme from Klebsiella pneumonia ASR1 and expressed in Escherichia coli, which was sequenced and characterized as a 42 kDa [1], and Crystallized [2]. The objectives are to perform phylogenetic similarity and molecular evolutionary analysis of phytase and to determine active site protein motif of phytase from different sources. The sequence from PhyK was analyzed with Basic Local Alignment Search Tools (BLAST) at http://www.ncbi.nlm.nih.gov  and ClustalW Multiple Sequence analysis program (EMBL-EBI) at http://www.ebi.ac.uk/Tools/msa/clustalw2/ to get similarity of amino acid sequence and phylogenetic trees for protein.  The result shows that PhyK protein from Klebsiella pneumonia ASR1 is 91% similar with PhyK from Raoultella terrigena (emb|AJ575300.1|), 94% similar with histidine acid phosphatase family protein from Klebsiella pneumoniae 342, and 69% similar with glucose-1-phosphatase precursor Agp from Pantoea ananatis AJ13355 (BAK10365.1).The deduced amino acid sequence of the phyK gene from Klebsiella pneumonia ASR1, although containing the functional residues of histidine acid phosphatases, displayed only 31% overall homology with appA from Escherichia coli O104:H4 str. C227-11 (EGT68141.1), 30% similar with glucose-1-phosphatase from Pantoea agglomerans (gb| ABD85282.1|) and 26% to phytase from Aspergillus fumigatus (AAU93517.1). This suggests that PhyK represents a novel subfamily histidine acid phytate-degrading enzyme and is clearly distinct from other previously characterized members of this family. Keywords: Bioinformatics, BLAST, 3-Phytase, PhyK protein, Phylogenetic Similarity
Co-Authors A. Ashadi, A. A. C. Pritasari, A. C. A. N. Khasanah, A. N. A. Wibowo A.A. Ketut Agung Cahyawan W A.M.P. Nuhriawangsa Achrudin Achrudin Ade Febri Adelia Anisa Adi M.P. Nuhriawangsa Adi Magna Patriadi Nuhriawangsa Adi Ratriyanto Adi Ratriyanto Adi, Fadhil Purnama Afandi Afandi Agung Budiharjo Agus Efendi Ahadia Busyaroh Asyhuri Ahmad Khoiri Ahmad Makmur Santoso Ahmad Makmur Santoso Ahmad Musthofa Anshori Alfian Primahesa Ali Wibowo Aline Puspita Kusumadjaja Amalia Firdaus Yanti Ana Susanti Ana Susanti Andini Dewi Sekarningrum Andriani, Lutfi Andrias Marstanto Setyo Pranoto Andrias Marstanto Setyo Pranoto, Andrias Marstanto Setyo Anggit Sasmito, Anggit Anik Twiningsih Anisyah Yuniarti Anjarwati, Pamula Guruh Prastiwa ARI SUSILOWATI ARI SUSILOWATI Ari Susilowati Arief B. Witarto Ariyanto J Artini Pangastuti Ashadi Ashari, Dhita Karunia Asnafiyah, Asnafiyah Atika GA, Atika Atika Guritna Ayu ATIKA GURITNA AYU, ATIKA GURITNA Atmojo, I. R. W. Ayu Rahma Ulufa Nuri Aziza Icksan Bambang Purwanto Baraka Stewart Mkumbe Baraka Stewart Mkumbe Baraka Stewart Mkumbe Baskoro Adi Prayitno Baskoro Adi Prayitno Baskoro Adi Prayitno Baskoro Adi Prayitno Baskoro Adi Prayitno Baskoro Adi Prayitno Baskoro Adi Prayitno Baskoro Adi Prayitno Baskoro Baskoro Basori Basori Basori Basori Bertha Wikara Betty Novia Pramesti Bowo Sugiharto Cari Cari Catur Suci Purwati Chrisnia Octovi Chumdari Chumdari, Chumdari Cindy Puspitasari D Fatmawati Denny Muhammad Fajar Deny Febriana, Deny Desy Fajar Priyayi Devita Yudhayanti, Devita Dewanto Harjunowibowo Dewanto Harjunowibowo Dewi - Rochsantiningsih Dewi Anjani, Dewi Dhora Vasminingtya Dhora Vasminingtya R.C, Dhora Dian Kurvayanti Innatesari Didik T Subekti Dito, Bahana Safiria Dono Indarto Drajat Tri Kartono Dwi Hartanti Dwi Hartanti DWI OETOMO Dwi Oetomo Dwi Oetomo Dwi Oetomo Dwi Retno Sari, Dwi Retno Dwi Setyo Astuti Effendi, Bob Soelaiman Eko Setyaningsih Eko Setyaningsih, Eko Elisa Dewi Yuliarti Elok Norma Khabibah, Elok Norma Endang Purwanti Ervan Johan Wicaksono, Ervan Johan Erwin Sulistianti Etviana, R. Evi Elisanti Evi Elisanti, Evi Evi Noor Hidayah Fadhil Purnama Adi, Latifah Nur Afifah, Rukayah, Fakhrurrazi Farah Halimah Fatih Ngaisah Wijayanti, Fatih Ngaisah Febri, Ade Fibriana, F. Fitriana Dwi Utari, Fitriana Dwi Fitriyana Rachmah Gilang Mahendrati Greiner, Ralf Gunawan Setiadi Sunardi Hailu Weldekiros Hailu Hailu Weldekiros Hailu, Hailu Weldekiros Hanni Hanifah Harlita Harlita Hastjarjo, Sri Heni Pujiastuti Hephi Meilinda, Hephi Herning Nurdiana Herning Nurdiana Hery Widijanto Himawan, Widhi Hudin, Robertus I Gusti Ngurah Antaryama I Nyoman Tri Bayu Tanaya, I Nyoman Idam Ragil Widianto Atmojo Idam Ragil Widianto Atmojo Idam Ragil Widianto Atmojo Idhun Prasetyo Riyadi, Idhun Prasetyo Innatesari, Dian Kurvayanti Intan Mustikasari Irma Yuniar Wardhani Isma Aziz Fakhrudin Jayawarsa, A.A. Ketut Joko Ariyanto Joko Sulianto . . Kusuma Wardany Latif Agung Nugroho, Latif Agung Lilia Halim, Lilia M. Akhyar, M. M. Eka Hidayatullah M. Muzzazinah M. Noris Mahfudhoh, Nimatul Laili Nur Mardiyono Mardiyono Maridi - - Maridi Maridi Maridi Maridi Maridi Maridi Maridi, M Marinda Mega Nurfitriani, Marinda Mega Marjono Marjono Matsuri . Meti Indrowati Misbahul Jannah Mkumbe, Baraka Stewart Moh Salimi Mohammad Masykuri Mohammad Masykuri Mufida Nofiana Muhammad Akhyar Muhammad Eka Hidayatullah Muhammad Naufal Mu’afa Munawwaroh Kurniati Munawwaroh Kurniawati, Munawwaroh Murni Ramli Murni Ramli Murni Ramli Murni Ramli Murni Ramli Murni Ramli Murni, Odela Priscilia N Y Indriyanti N. SURYANI Nana - - Nancy, Natasha Nanik Murti Prasetyanti Nanik Murti Prasetyanti Nanik Murti Prasetyanti, Nanik Murti Ni Nyoman Tri Puspaningsih Nila Permatasari Nila Permatasari Nulngafan Nulngafan Nulngafan, Nulngafan Nunuk Suryani Nur Khasanah Nur Khasanah Nur Khasanah Nurdiana, Herning Nuri, Ayu Rahma Ulfa Nuri, Ayu Rahma Ulufa Nurinasari, Hafi Nurmiyati Nurmiyati Nurul Huda Zaen Pamula Guruh Prastiwa Anjarwati Pamula Guruh, Pamula Parmin - Parmin Parmin Prabang Setyono Pramesti, Betty Novia Prayitno, B. A. Puguh Puguh - Karyanto PUGUH KARYANTO Puguh Karyanto Puput Dwi Maret Tanti R. M. Probosari Rahmawati Ika Listyaningrum Ralf Greiner Ralf Greiner Ralf Greiner Riezky Maya Probosari Riezky Maya Probosari Rifkie Aziz Agustian, Rifkie Aziz Rika Dian Kurniawati Riyadi Riyadi Rizki Agung, Rizki Rizki Permata Yusniawati, Rizki Permata Roslan, Roslinawati Mohd Rosmala Setiawati, Rosmala Roy Ardiansyah Roy Ardiansyah Roy Ardiansyah, Roy S Suciati S. Dwiastuti, S. S. Sutarno, S. S. Widoretno, S. Sabila, Wahdania Nuris Safrilla Rahma Marshella Santoso S Saputri, D. Y. Saputri, Dwi Yuniasih Saraswati, Zahra Nadhila Sarwanto Sarwanto Sarwanto Sarwanto Sentot Budi Rahardjo Septina Dwi Prasetyana, Septina Dwi Setiani, Indra Setria Utama Rizal Shinta Devi Amielia, Shinta Devi Sindy Nurinda Sindy Nurinda, Sindy Singgih Prihadi Siswandari Siswandari Siti Alisah Siti Patonah siti wulandari Slamet Santosa Soeharto Soeharto Soetarno Joyoatmojo Sri Dwiastuti Sri Dwiastuti Sri Dwiastuti Sri Dwiastuti Sri Widoretno Sri Widoretno Sri Widoretno Suciati Suciati Suciati Suciati Suciati Sudarisman Suciati Sudarisman Sugiyanto Sugiyanto Sugiyarto Sugiyarto Sugiyarto Sugiyarto Sukarmin Sulistyawan, Herwanto Gede Sulistyo Saputro Sunarto Sunarto Suranto Suranto Suranto Suranto, S. Suraya, Ana Susilowati Susilowati Sutarno Sutarno Sutarno Sutarno Sutarno Sutarno Sutarno Sutarno Sutikno Madnasri Suwarno Suwarno Suwarno Suwarno Suwarno Suwarno Suwarno Suwarno Suyitno, Margiyono Tina Nur Khasanah, Tina Nur Tri - Novana Tutuk Budiati Twiningsih, Anik Umi Fatmawati UMI FATMAWATI Umi Fatmawati Umi Fatmawati Ummi Nur Afinni Dwi Jayanti, Ummi Nur Afinni Utami, Fitri Astuti Wahyu Walid, Ahmad Widha Sunarno Widha Sunarno Wijarini, Fitri - Wijayanti, Sovia Wikara, B. Winarno, Widha Winarsih - Wiranto Wulandari Wulandari Yanti, Amalia Firdaus Yasinta Choirina Yasir Sidiq Yenny Putri Pratiwi, Yenny Putri Yuhana Yuhana, Yuhana Yuliati - Z. Bachruddin Zaenal Bachruddin