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Journal : UNEJ e-Proceeding

Review: Phylogenetic Similarity based on amino acid sequence and Molecular characterization of 3-Phytase from Klebsiella pneumonia ASR1 ., Sajidan; Hailu, Hailu Weldekiros
UNEJ e-Proceeding Indonesian Protein Society (IPS), International Seminar and Workshop 2014
Publisher : UNEJ e-Proceeding

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Abstract

Phytase is an enzyme that catalyzes the release of phosphomonester group in phytate, thereby producing lower forms of myo-inositol phosphates and inorganic phosphate.  Phytase has an important role in animal nutrition which improves the bioavailability of nutrients.  Bacteria are one of the potential sources of phytase. For this reason, more screening of phytase producing bacteria strains from environment is needed. The other sources of phytase are fungi, plants, and some animal tissues. The PhyK protein is a phytase enzyme from Klebsiella pneumonia ASR1 and expressed in Escherichia coli, which was sequenced and characterized as a 42 kDa [1], and Crystallized [2]. The objectives are to perform phylogenetic similarity and molecular evolutionary analysis of phytase and to determine active site protein motif of phytase from different sources. The sequence from PhyK was analyzed with Basic Local Alignment Search Tools (BLAST) at http://www.ncbi.nlm.nih.gov  and ClustalW Multiple Sequence analysis program (EMBL-EBI) at http://www.ebi.ac.uk/Tools/msa/clustalw2/ to get similarity of amino acid sequence and phylogenetic trees for protein.  The result shows that PhyK protein from Klebsiella pneumonia ASR1 is 91% similar with PhyK from Raoultella terrigena (emb|AJ575300.1|), 94% similar with histidine acid phosphatase family protein from Klebsiella pneumoniae 342, and 69% similar with glucose-1-phosphatase precursor Agp from Pantoea ananatis AJ13355 (BAK10365.1).The deduced amino acid sequence of the phyK gene from Klebsiella pneumonia ASR1, although containing the functional residues of histidine acid phosphatases, displayed only 31% overall homology with appA from Escherichia coli O104:H4 str. C227-11 (EGT68141.1), 30% similar with glucose-1-phosphatase from Pantoea agglomerans (gb| ABD85282.1|) and 26% to phytase from Aspergillus fumigatus (AAU93517.1). This suggests that PhyK represents a novel subfamily histidine acid phytate-degrading enzyme and is clearly distinct from other previously characterized members of this family. Keywords: Bioinformatics, BLAST, 3-Phytase, PhyK protein, Phylogenetic Similarity
Co-Authors - Fakhrurrazi A. Ashadi, A. A. C. Pritasari, A. C. A. N. Khasanah, A. N. A. Wibowo A.A. Ketut Agung Cahyawan W A.M.P. Nuhriawangsa Achrudin Achrudin Adelia Anisa Adi Magna Patriadi Nuhriawangsa Adi Ratriyanto Adi, Fadhil Purnama Afandi Afandi Agus Efendi Ahmad Khoiri Ahmad Makmur Santoso Ana Susanti Andriani, Lutfi Andrias Marstanto Setyo Pranoto, Andrias Marstanto Setyo Anggit Sasmito, Anggit Anjarwati, Pamula Guruh Prastiwa ARI SUSILOWATI Arief B. Witarto Ariyanto J Ashadi Ashari, Dhita Karunia Asnafiyah, Asnafiyah Atika GA, Atika ATIKA GURITNA AYU, ATIKA GURITNA Atmojo, I. R. W. Ayu Rahma Ulufa Nuri Aziza Karenina, Aziza Baskoro Adi Prayitno Baskoro Adi Prayitno Baskoro Adi Prayitno Basori Basori Bowo Sugiharto Catur Suci Purwati Chrisnia Octovi Chumdari Chumdari Deny Febriana, Deny Desy Fajar Priyayi Devita Yudhayanti, Devita Dewanto Harjunowibowo Dewi - Rochsantiningsih Dewi Anjani, Dewi Dhora Vasminingtya R.C, Dhora Dian Kurvayanti Innatesari Drajat Tri Kartono Dwi Hartanti Dwi Oetomo DWI OETOMO Dwi Retno Sari, Dwi Retno Effendi, Bob Soelaiman Eko Setyaningsih, Eko Elok Norma Khabibah, Elok Norma Endang Purwanti Ervan Johan Wicaksono, Ervan Johan Etviana, R. Evi Elisanti Evi Elisanti, Evi Evi Noor Hidayah Fadhil Purnama Adi Fatih Ngaisah Wijayanti, Fatih Ngaisah Febri, Ade Fibriana, F. Fitriana Dwi Utari, Fitriana Dwi Fitriyana Rachmah Gilang Mahendrati Greiner, Ralf Hailu Weldekiros Hailu, Hailu Weldekiros Hanni Hanifah Harlita Harlita Hastjarjo, Sri Heni Pujiastuti Hephi Meilinda, Hephi Herning Nurdiana Hidayatullah, Muhammad Eka Himawan, Widhi Hudin, Robertus I Gusti Ngurah Antaryama I Nyoman Tri Bayu Tanaya, I Nyoman Idam Ragil Widianto Atmojo Idam Ragil Widianto Atmojo Idhun Prasetyo Riyadi, Idhun Prasetyo Innatesari, Dian Kurvayanti Intan Mustikasari Irma Yuniar Wardhani Isma Aziz Fakhrudin Jayawarsa, A.A. Ketut Joko Ariyanto Latif Agung Nugroho, Latif Agung Lilia Halim M. Akhyar, M. M. Noris Maridi - - Maridi Maridi Maridi Maridi Marinda Mega Nurfitriani, Marinda Mega Meti Indrowati Misbahul Jannah Mkumbe, Baraka Stewart Moh Salimi Mufida Nofiana, Mufida Muhammad - Akhyar Muhammad Akhyar Munawwaroh Kurniawati, Munawwaroh Murni Ramli N. SURYANI Nana - - Nancy, Natasha Nanik Murti Prasetyanti Nanik Murti Prasetyanti, Nanik Murti Nulngafan, Nulngafan Nunuk Suryani Nur Khasanah Nur Khasanah Nuri, Ayu Rahma Ulufa Nurmiyati Nurmiyati Pamula Guruh, Pamula Parmin - Parmin Parmin Prabang Setyono Pramesti, Betty Novia Prayitno, B. A. Puguh - Karyanto Puguh Karyanto PUGUH KARYANTO Puput Dwi Maret Tanti R. M. Probosari Rahmawati Ika Listyaningrum Riezky Maya Probosari Rifkie Aziz Agustian, Rifkie Aziz Riyadi Riyadi Rizki Agung, Rizki Rizki Permata Yusniawati, Rizki Permata Roslinawati Mohd Roslan Rosmala Setiawati, Rosmala Roy Ardiansyah Roy Ardiansyah, Roy S. Dwiastuti, S. S. Sutarno, S. S. Widoretno, S. Sabila, Wahdania Nuris Santoso S Saputri, D. Y. Saputri, Dwi Yuniasih Saraswati, Zahra Nadhila Sarwanto Sarwanto Septina Dwi Prasetyana, Septina Dwi Setiani, Indra Setria Utama Rizal Shinta Devi Amielia, Shinta Devi Sindy Nurinda, Sindy Singgih Prihadi Siswandari Siswandari siti wulandari Slamet Santosa Sri Dwiastuti Sri Widoretno Suciati Suciati Suciati Sudarisman Sugiyanto Sugiyanto Sugiyarto Sugiyarto Sukarmin Sulistyawan, Herwanto Gede Sulistyo Saputro Sunarto Sunarto Suranto Suranto Suranto Suranto Suranto, S. Suraya, Ana Susilowati Susilowati Sutarno Sutarno Sutarno Sutarno Sutikno Madnasri Suwarno Suwarno Suyitno, Margiyono Tina Nur Khasanah, Tina Nur Tri - Novana Twiningsih, Anik UMI FATMAWATI Ummi Nur Afinni Dwi Jayanti, Ummi Nur Afinni Utami, Fitri Astuti Wahyu Walid, Ahmad Widha Sunarno Wijarini, Fitri - Wijayanti, Sovia Wikara, B. Winarno, Widha Winarsih - Wiranto Wiranto Wulandari Wulandari Yasinta Choirina Yenny Putri Pratiwi, Yenny Putri Yuhana Yuhana, Yuhana Yuliati - Z. Bachruddin