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Journal : Microbiology Indonesia

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Multiplex PCR for Rapid Detection of Rifampin and Isoniazid Resistance in Mycobacterium tuberculosis Isolated from Bandung, Indonesia IWAN SASKIAWAN; NUR HASANAH
Microbiology Indonesia Vol. 1 No. 3 (2007): December 2007
Publisher : Indonesian Society for microbiology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.5454/mi.1.3.4

Abstract

Mycobacterium tuberculosis resistant to rifampin and isoniazid, known as multidrug-resistant M. tuberculosis (MDR-TB) strains, is an emerging problem of great importance to public health, with higher mortality rates than for drug-sensitive strains. Rifampin resistance is due to mutations on the hot spot region of the rpoB gene, especially at positions 526 and 531, and isoniazid resistance is due to mutation on katG at position 315. Mechanisms of resistance are an appropriate target for molecular genotyping diagnostic methods. Here we examined the multiplex PCR assays for the rapid detection targeting rpoB526, rpoB531, and katG mutations. Sixty-one M. tuberculosis strains were studied based on rpoB526, rpoB531, and katG315 assays employing multiplex PCR. Of the 61 strains, the susceptibility tests determined 42 isolates were MDR-TB strains, 10, 4, and 5 isolates were resistant to rifampin, isoniazid, and at least to six drugs which prescibed for TB, respectively. The mutation profiles of the 42 MDR strains assayed by multiplex PCR were 81 and 38.1% on rpoB and katG, respectively. Six rifampin-resistant isolates (60%) had a mutation on rpoB, 25% isoniazid-resistant isolates had mutation on katG, and 20% of the isolates that were sensitive to all drugs tested had a mutation on rpoB. Sequencing analysis revealed sensitivity of the multiplex PCR assay for rpoB was 98.4% and was 100% for katG. There was a 19% difference between phenotype and genotype properties of all isolates detected. In conclusion, the sensitivity of multiplex PCR method was sufficient for preliminary detection of rpoB and katG mutations, but resistance M. tuberculosis to rifampin and isoniazid were not always conferred by mutated alleles on rpoB and, especially, on katG.
Screening, Purification, and Characterization of Cellulase from Fungi Isolated from Used Mushroom Substrate IWAN SASKIAWAN; NUR HASANAH
Microbiology Indonesia Vol. 9 No. 4 (2015): December 2015
Publisher : Indonesian Society for microbiology

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (834.134 KB) | DOI: 10.5454/mi.9.4.5

Abstract

Alarge number of microorganism especially filamentous fungi has ability to degrade cellulose. The purpose of this study was to conduct screening, purification, and characterization of cellulase from fungi which was isolated from used paddy straw mushroom substrate. Screening of cellulytic activity using CMC medium shown that 11 out of 20 isolates of fungi produced a clearing zone surrounding fungal colony. Among them isolate number JMF 12 showed the highest cellulase activity and was further used for purification and characterization. The cellulase was purified to electrophoretical homogeneity by ammonium sulfate precipitation, dialyzed by Novagen D-Maxi TubeTM Dialyzer, and Sephadex G-100 gel filtration chromatography. The recovery and purification fold was 3.82 % and 1.98 respectively, after Sephadex G-100 gel filtration chromatograph. The o purified cellulase had an optimal pH and temperature at 6 and 45 C. The Km and Vmax of cellulase was 11.43 mM and 0.006mmol/min respectively. The purified cellulase was activated by Na+ and Zn++ but inhibited by Ca++, Co++, Fe++, and  Hg++ .
Co-Authors Abdat, Munifah Abdul Khobir Abdul Rauf Chaerudin Ade Ilham Kesuma Ade Irawan Ade Putra Adelina Hasyim Adinda Anisah Annafilah Aenor Rofek Afidah Diniyah Aggnes Anggelea Patricia Agus Prianto Agus Solikhin Agus Triyadi Agus Wartiningsih Ahmad Mardalis, Ahmad Ahmadin Aini Kurnia Al Baihaqi Anas Aldila Rizma Amalia Aldila Rizma Amalia Alfina Musfiroh Ambarwati, Rini Amelia Putri Andika Saputra Andriyadi Marta Anggit Prahesti Anis Febriyanti Anita Detaviani Annisa Nayla Safitri Annisa Puspadewi Anshori, Mochammad Isa Anzilly Ifadatun Ummah Aprini, Nisma Ari Pratiwi Arif Imam Suroso Arif Wicaksono Aris Iwansyah Arul Mu`is Ary Dwi Astuti Aslikhatun Khoiriyah Asnawi, Muhamad Fuat Asnawi, Muhamad Fuat Asnawi Assyifa Deswita Mrp Astindari, Tri Astini, Baik Nilawati Ayu Sofiyani Kamilah Azah Zumroh Azka Alfarizi Bambang Wirawan Benedictus Kusmanto Budi Syamtoro Cahya Nurul Huda Ceisya Amaro Chairunisa Nur Fadila Dadang Mashur Daris Zunaida Destin Aulia Khaira Devi Yuliani Devi Yunita Devita Ode Dewi Liesnoor Setyowati Dheska Arthyka Palifiana dian asmarajati Dian mala Fithriani Aira Dika Setiagraha Dila Eriska Dina Intan Sukmayanti Diva Permata Insani Diyana Septiningrum Dwi Utari Widyastuti Efendi Harahap Eko Andy Purnomo Eko Suyanto El Syam, Robingun Suyud Elok Dwi Vidiyastutik Endah Faridah Erna Watngil Etty Nur Rahmawati Euis Eti Rohaeti Eva Dwi Minarti Eva Oktaviana Eva Sahriani Sikumbang Evi Sribudiani Faiz Maulana Fajar Saptono Fathor Rakhman Fatimah Azzahroh Fatmasari, Nawang Fitriani Pramita Gurning Hanief Satria Dharmeswara Hardiyansyah Hasanah, Iva Datul Herdian Albakhor Gumilang Hidayatus Sibyan Holilulloh Holilulloh Hotmian Situmorang I Nyoman Suarta I Wayan Karta Ida Fitriana Ambarsari Ida Fitriana Ambarsari Iing Mutakhiroh Iir Roidotus Syariifah Ika Neni Kristanti Ilvi Mawaddah Imas Permatasari Indah Khairunnisa Kuba Indri Angraini Indriatie . Indriatie, Intan Kurniawati Intan Nurul’atha Irjus Indrawan Israyani Iva Nur Zakiya IWAN SASKIAWAN Jauchar Jauchar B Jayadi Putra, Eka Jenny Indrastoeti Siti Poerwanti Jessika Mutiara Juanda Lianzah JUFRIZAL - Jufrizal - Juliati Juliati Kabul Trifiyanto Kasmi Khafik Rozak KHOIRUN NISA Khoirun nisya Kunduri Kunduri Kurnia Agung Prastyo Kusfriyadi, Mars Khendra Laila Nur Azizah Laksmi Prita Wardhani Lamdo, Herfandi Laurensius Salem Lela Siti Thohiryah Lembunai Tat, Albertha Lilik Noor Yuliati Lusi Endang Sri Darmawati M. Mun’im Made Sutarna Maia Aulia Noeryani Mantofani Andreas Maria Ulfa Maulana Fansyuri Meautia Hanifah Medyana Ervyn Wilujeng Melati Dama Miftahus Surur Mohammad Liwa Ilhamdi Moneca Diah Listianingsih Mudiono Mudiono Muh. Armansyah muhamad Fuat Asnawi Muhamad Syazali Muhammad Abror Muhammad Adriansyah Siregar Muhammad Alif Muwafiq Baihaqy Muhammad Amin Muhammad Basri Muhammad Fajri Muhammad Fauzan Muhammad Galang Hidayatullah H Muhammad Irfansyah Muhammad Jamal Amin Muhammad Maskur Musa Muhammad Safir Muhsinin Nisa Ansori Mulka, Sry Reski MULYANI Munifah Abdat Murtiyana Sari Musawir Al Ghani Muslim Hidayat Mustafiyanti Mustafiyanti mutiara mutiara Nadhilah hasibuan Nadia Amanda Azwa Nanik Sulistyani Narwikah Narwikah Nasiruddin Nengah Arpurina Reskian Ni Putu Desy Siantia Dewi Nikmatul Khayati Nina Anggreani Ning Ira Faturrohmah Ningsih, Ariyati Ninik Rahmawati Nining Arianingsih Niswatul Azizah Nasution Nizar Nizar Nofita Nofita Nova Yohana Novi Arilia Safitri Novi Indrayani NOVITA EKA SARI Novtria Rahmadani Nulngafan Nunung Faizah Nunung Faizah Nur Hosen Nur Khoiri Nur Subeki Nurlita Dwi Oktavia Nurmisda ramayani Nurul Juwariyah Nurul Lathifatul Fithriya Nurviarahman Nurdin Nuryaman Nuryaman Oktarina Yusra Padoli Padoli Padoli Padoli, Padoli padolipdl Patricia Rinwigati Prawidi Sakti, Ilham Prihartini Budi Astuti Puji Wardayanti Putri Syafaatun Putri Syahri Qde Astri Nurdianty Qoriah Saleha Rachmayani, Ika Rafidah Riahta Rahma Widiantie Rahma Winanda Rama Doni Ramadhan Lubis Rastiar Nabyla Putri Raudatul Jannah Reo Tommi Pratama Resty Z Fahrida Retantyo Wardoyo Retnaningsih, Agustina Reza Tri Kurniawan Riana Sitawati Riki Wahyudi Rini Ambarwati Rini Ambarwati Riska Nur Aini Risma Eka Desiyabu Ristania Ria Rapella Sinaga Rizka, Yulia Rizkyna Qur`aini Rizma Fauziyah Rofik Iskandar romi wiryadinata Rudianda Sulaeman Rusdin Rusi Rusmiati Aliyyah Sabariah Sabariah Sagita Efendi Saifu Rohman Sardi Yusuf Sari Mariati Sayyidati Zahira Seftina Fifi Mangitung Sera, Agnescia Clarissa Sherli Sherlvi Eka Tassia Sholihah Roekhana Sibyan, Hidayatus Siskawati Amri Siti Aisjah Siti Imaniatul Muflihatin Siti Sarah Ayu Alamsyah Siti Seituni Sitti Aisyah Sopiah Sopiah Sri Nuringwahyu SRI RAHAYU Sri Rejeki Sriyadi St Isnaini Suci Wulandari Sukowiyono Sumarni Sumarni Supangat Supangat Suwondo, Adi Syakila Azahra Syawaludin Syawaludin Syfa Nailul Husnah Tamara Fauziah Tamaulina Br Sembiring Tengku Muhammad Alfi Syahrin Titi Purbo Sari Tri Umari Tukijan . Tutik Astuti Tutik Siswanti Untung Sujianto Venissa Dian Mawarsari Wahyu Achmad Ramadhan Warrantia Citta Citti Putri Wasiyem, Wasiyem Wawan Kurniawan Wayan Suana Widiastuti, Fitri Wisman Hadi Yayuk Sri Kasiani Yesi Puspitasari Yoga Aji Nugraha Yufani Battista Rossi Yumi Kholifah Yuniar Sulistyo Kartika Sukma Yunisca Nurmalisa Zahroh, Roihatul Zakiyatun Nabila zulfatun anisah Zulfina Adriani Zulian Firmansyah